Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s HindIII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_HindIII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6129109-SRR6129110-SRR6129111-SRR6129112-SRR6129113-SRR6129114/__temp__                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  197,818,209
 Normal Paired: 88,000,633 (44.49%)
 Chimeric Paired: 98,242,414 (49.66%)
 Chimeric Ambiguous: 10,151,997 (5.13%)
 Unmapped: 1,423,165 (0.72%)
 Ligation Motif Present: 100,961,223 (51.04%)
Alignable (Normal+Chimeric Paired): 186,243,047 (94.15%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-17T04:19:02,587]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 164,037,847 (82.92%)
PCR Duplicates: 22,205,200 (11.23%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 717,643,990
Intra-fragment Reads: 14,885,265 (7.52% / 9.07%)
Below MAPQ Threshold: 15,099,592 (7.63% / 9.20%)
Hi-C Contacts: 134,052,990 (67.77% / 81.72%)
 Ligation Motif Present: 73,946,207  (37.38% / 45.08%)
 3' Bias (Long Range): 93% - 7%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 17,699,553  (8.95% / 10.79%)
Intra-chromosomal: 116,353,437  (58.82% / 70.93%)
Short Range (<20Kb): 41,880,761  (21.17% / 25.53%)
Long Range (>20Kb): 74,472,667  (37.65% / 45.40%)